Protein Alignment HmgD and hmgb1a

DIOPT Version :9

• Sequence 1: NP_001163244.1
• Gene: HmgD / 37481
• FlyBaseID: FBgn0004362
• Length: 112
• Species: Drosophila melanogaster
• Sequence 2: NP_955849.2
• Gene: hmgb1a / 321622
• ZFINID: ZDB-GENE-030131-341
• Length: 205
• Species: Danio rerio
• Alignment Length: 111
• Identity: 44/111 - (39%)
• Similarity: 65/111 - (58%)
• Gaps: 6/111 - (5%)

  Fly     5 PKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWR--AMKDKSEWEAKAAKAKDDYDRAV 67
            ||||.||:.::.:..|..:|.|.||:.:.:||||.||:|.  :.::|..:|.||||.|:.|::.:
Zfish    94 PKRPPSAFFIFCSEFRPKVKEETPGLSIGDVAKRLGEMWNKISSEEKQPYEKKAAKLKEKYEKDI 158

  Fly    68 KEFEANGGSSAANGGGAKKRAKPAK-KVAKKSKKEESDEDDDDESE 112
            ..:.:.|   ...||.||..:||.| ....:...||.|||||||.|
Zfish   159 AAYRSKG---KVGGGAAKAPSKPDKANDEDEDDDEEEDEDDDDEEE 201

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
HmgD	NP_001163244.1	HMGB-UBF_HMG-box	5..68	CDD:238686	26/64 (41%)
hmgb1a	NP_955849.2	HMG-box	7..77	CDD:320749
		HMG_box	94..161	CDD:278906	26/66 (39%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1641977at2759
OrthoFinder	1	1.000	-	-		FOG0000133
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	1	0.900	-	-		OOG6_100324
Panther	1	1.100	-	-	O	PTHR48112
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	5	4.920