DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and hmgb1a

DIOPT Version :10

Sequence 1:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:NP_955849.2 Gene:hmgb1a / 321622 ZFINID:ZDB-GENE-030131-341 Length:205 Species:Danio rerio


Alignment Length:111 Identity:44/111 - (39%)
Similarity:65/111 - (58%) Gaps:6/111 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 PKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWR--AMKDKSEWEAKAAKAKDDYDRAV 67
            ||||.||:.::.:..|..:|.|.||:.:.:||||.||:|.  :.::|..:|.||||.|:.|::.:
Zfish    94 PKRPPSAFFIFCSEFRPKVKEETPGLSIGDVAKRLGEMWNKISSEEKQPYEKKAAKLKEKYEKDI 158

  Fly    68 KEFEANGGSSAANGGGAKKRAKPAK-KVAKKSKKEESDEDDDDESE 112
            ..:.:.|   ...||.||..:||.| ....:...||.|||||||.|
Zfish   159 AAYRSKG---KVGGGAAKAPSKPDKANDEDEDDDEEEDEDDDDEEE 201

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 24/65 (37%)
hmgb1aNP_955849.2 HMG-box_HMGB_rpt1 7..75 CDD:438794
HMG-box_HMGB_rpt2 92..162 CDD:438795 26/67 (39%)
Blue background indicates that the domain is not in the aligned region.

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