DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and Bap111

DIOPT Version :9

Sequence 1:NP_001163244.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:NP_572530.1 Gene:Bap111 / 31846 FlyBaseID:FBgn0030093 Length:749 Species:Drosophila melanogaster


Alignment Length:123 Identity:31/123 - (25%)
Similarity:60/123 - (48%) Gaps:19/123 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 PKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAM--KDKSEWEAKAAKAKDDYDRAV 67
            |::|:..||.:.....:|:|.::|.:|:.|:.|:.|.:|:.:  .:|:|:..:....|.:|::::
  Fly    89 PEKPILPYMRYSKRVWDSVKAKHPELKLWELGKKIGAMWKLLPEDEKTEFIDEYEAEKLEYEKSL 153

  Fly    68 KEFEANGGSSAANGGGAKKRAK--------PAKKVAKKSKKEE-------SDEDDDDE 110
            |.:.......|..  .||.:.|        |::....||:.|.       .||||.||
  Fly   154 KAYHQTPAYQAYM--SAKSKVKTDVDMHETPSRGGGSKSQHERRIDIQPAEDEDDQDE 209

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_001163244.1 HMGB-UBF_HMG-box 5..68 CDD:238686 16/64 (25%)
Bap111NP_572530.1 HMGB-UBF_HMG-box 95..154 CDD:238686 14/58 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45450763
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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