Protein Alignment HmgD and RGD1561558

DIOPT Version :9

• Sequence 1: NP_001163244.1
• Gene: HmgD / 37481
• FlyBaseID: FBgn0004362
• Length: 112
• Species: Drosophila melanogaster
• Sequence 2: XP_038956285.1
• Gene: RGD1561558 / 317314
• RGDID: 1561558
• Length: 168
• Species: Rattus norvegicus
• Alignment Length: 72
• Identity: 23/72 - (31%)
• Similarity: 40/72 - (55%)
• Gaps: 5/72 - (6%)

  Fly     3 DKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWR--AMKDKSEWEAKAAKAKDDYDR 65
            |.|::|.|:::|:.....:.||.::|...|.:|||..|.:|.  :..||..:|.:||..:..|
  Rat    91 DAPRKPPSSFLLFSQDHFDEIKEQHPNWTVAQVAKAAGRMWARCSEADKIPYEERAAVLRAKY-- 153

  Fly    66 AVKEFEA 72
             ::|.||
  Rat   154 -LEEREA 159

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
HmgD	NP_001163244.1	HMGB-UBF_HMG-box	5..68	CDD:238686	19/64 (30%)
RGD1561558	XP_038956285.1	HMGB-UBF_HMG-box	9..76	CDD:238686
		HMGB-UBF_HMG-box	95..158	CDD:238686	19/65 (29%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR48112
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	2.010