DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and CG4617

DIOPT Version :9

Sequence 1:NP_001163244.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:NP_001259308.1 Gene:CG4617 / 31657 FlyBaseID:FBgn0029936 Length:418 Species:Drosophila melanogaster


Alignment Length:88 Identity:27/88 - (30%)
Similarity:43/88 - (48%) Gaps:18/88 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 DKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWR--AMKDKSEW------EAKAAKA 59
            ||.|:..:||.||   |:|:.:::...:..|...:|..|||.  :.:||:.|      ||..||.
  Fly   158 DKGKQRYTAYSLW---AKEARQKDLQDLDFTSATRRLSELWANVSNRDKNTWRRKAKIEASRAKT 219

  Fly    60 KDDYDRAVKEFEANGGSSAANGG 82
            :|       :..|||.:..|:.|
  Fly   220 RD-------KTAANGATQPASNG 235

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_001163244.1 HMGB-UBF_HMG-box 5..68 CDD:238686 20/70 (29%)
CG4617NP_001259308.1 HMG-box 165..218 CDD:238037 16/55 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45449366
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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