DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and hmo1

DIOPT Version :10

Sequence 1:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:NP_595672.1 Gene:hmo1 / 2540337 PomBaseID:SPBC28F2.11 Length:310 Species:Schizosaccharomyces pombe


Alignment Length:113 Identity:35/113 - (30%)
Similarity:56/113 - (49%) Gaps:17/113 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 KPKRPLSAYMLWLNSARESIKRENPGIK---VTEVAKRGGELWRAMK--DKSEWEAKAAKAKDDY 63
            :||||.|||.|:..:.|..|| |:.|.|   |.||.|...|.|.::.  |:..:|.:|:|.::.|
pombe   116 QPKRPPSAYNLFQKNQRSEIK-ESLGEKSNDVKEVNKAMHEKWGSLSEDDRKTYEEEASKLREAY 179

  Fly    64 DRAVKEFEANGGSSAANGGGAKKR-------AKPAKKVAKKSKKEESD 104
            :..:..:.|    |..|...|..|       .||::.::..:||:..|
pombe   180 EEEMAAYNA----SKENASVADSRVTAEETSTKPSEDLSSPTKKDLID 223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 23/68 (34%)
hmo1NP_595672.1 HMG-box_SF 110..186 CDD:469606 25/70 (36%)

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