DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and Ssrp1

DIOPT Version :10

Sequence 1:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:NP_892035.2 Gene:Ssrp1 / 20833 MGIID:107912 Length:708 Species:Mus musculus


Alignment Length:132 Identity:51/132 - (38%)
Similarity:78/132 - (59%) Gaps:25/132 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 PKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAM--KDKSEWEAKAAKAKDDYDRAV 67
            ||||:||||||||::||.||.::|||.:|:::|:.||:|:.|  :.|.||:.||..|:.:|::|:
Mouse   547 PKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAM 611

  Fly    68 KEFEANGGSSAANGGGAKKRAKPAKKVAKKS-------------------KKEE---SDEDDDDE 110
            ||:|...|.|:.. ..:||:.|...|:.|||                   |.:|   |||....|
Mouse   612 KEYEGGRGDSSKR-DKSKKKKKVKAKMEKKSTPSRGSSSKSSSRQLSDSFKSKEFVSSDESSSGE 675

  Fly   111 SE 112
            ::
Mouse   676 NK 677

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 33/65 (51%)
Ssrp1NP_892035.2 POB3 21..480 CDD:227494
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 458..708 51/132 (39%)
HMG-box_SSRP1-like 549..615 CDD:438810 33/65 (51%)
Blue background indicates that the domain is not in the aligned region.

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