Protein Alignment HmgD and hmg-6

DIOPT Version :10

• Sequence 1: NP_726109.1
• Gene: HmgD / 37481
• FlyBaseID: FBgn0004362
• Length: 112
• Species: Drosophila melanogaster
• Sequence 2: NP_493451.2
• Gene: hmg-6 / 185946
• WormBaseID: WBGene00009827
• Length: 128
• Species: Caenorhabditis elegans
• Alignment Length: 120
• Identity: 28/120 - (23%)
• Similarity: 41/120 - (34%)
• Gaps: 40/120 - (33%)

  Fly    35 PPSNNNIAN---YTNRNSGYPYQTCVAPAPARPL-----VARESCVRAEIVKD--------TQDL 83
            ||..|||.:   |...|.          .|..|.     :|.:.|.|.::..:        |.:.
 Worm    45 PPEANNIFDLFVYILENL----------PPWNPYFEVYELANKICNRCKMDLEYPGLFENLTFEK 99

  Fly    84 AVEFRQLSHNVPIKTEHCIANNVGQGMAT--------------NETGGELGITTA 124
            .|:..::|..:|...|.|...|..|.|..              |||.||:..||:
 Worm   100 FVQIIRISLKMPCDKEGCGKRNYVQRMINKLPTVFTIALEWEHNETEGEIFDTTS 154

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
HmgD	NP_726109.1	HMG-box_SSRP1-like	7..71	CDD:438810	10/43 (23%)
hmg-6	NP_493451.2	HMG-box_SF	54..107	CDD:469606	9/62 (15%)