DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and sox-2

DIOPT Version :10

Sequence 1:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:NP_741836.1 Gene:sox-2 / 181002 WormBaseID:WBGene00004949 Length:283 Species:Caenorhabditis elegans


Alignment Length:87 Identity:25/87 - (28%)
Similarity:43/87 - (49%) Gaps:13/87 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 DKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKSEW----EAKAAKA---- 59
            |:.|||::|:|:|....|:.:..|||.:..:|::||.|..|:.:.::.:.    |||..:|    
 Worm    58 DRVKRPMNAFMVWSRGQRKKMALENPKMHNSEISKRLGTEWKMLSEQEKRPFIDEAKRLRAIHMK 122

  Fly    60 -KDDYD----RAVKEFEANGGS 76
             ..||.    |..|......|:
 Worm   123 EHPDYKYRPRRKTKSINKKNGA 144

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 22/76 (29%)
sox-2NP_741836.1 HMG-box_SoxB 58..137 CDD:438790 23/78 (29%)

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