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Protein Alignment HmgD and Hmg20b

DIOPT Version :10

Sequence 1:	NP_726109.1	Gene:	HmgD / 37481	FlyBaseID:	FBgn0004362	Length:	112	Species:	Drosophila melanogaster
Sequence 2:	NP_001415470.1	Gene:	Hmg20b / 15353	MGIID:	1341190	Length:	415	Species:	Mus musculus

Alignment Length:	101	Identity:	30/101 - (29%)
Similarity:	46/101 - (45%)	Gaps:	12/101 - (11%)

- Green bases have known domain annotations that are detailed below.

  Fly     5 PKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMK--DKSEWEAKAAKAKDDYDRAV 67
            ||.|::.|:.:||..||.|:..:|.:...|:.|..|..|..::  :|..:..:|.|.|..|   :
Mouse    70 PKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQY---L 131

  Fly    68 KEFEANGGSSAANGGGAKKRAKPAKKVAKKSKKEES 103
            ||..|...|.|       .:....|....|.|||:|
Mouse   132 KELWAYQQSEA-------YKVCTEKIQENKIKKEDS 160

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.