DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and TFAM

DIOPT Version :10

Sequence 1:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:XP_316944.3 Gene:TFAM / 1277472 VectorBaseID:AGAMI1_003666 Length:277 Species:Anopheles gambiae


Alignment Length:109 Identity:26/109 - (23%)
Similarity:50/109 - (45%) Gaps:24/109 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 DKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKSEWEAKAAKAKDDYDRAV 67
            :|||||::.|:.:..|.|.|:...||....|:::|.....|:::.     :|..||.:::|.|..
Mosquito    51 EKPKRPMNTYIRFAQSIRSSLASANPQASPTDISKLAAVKWQSLD-----QATKAKLEEEYKREQ 110

  Fly    68 KEFEANGGSSAANGGGAKKRAK------PAKKVAKKSKKEESDE 105
            ..:             .:|.||      .|:|...|.::::.:|
Mosquito   111 AVW-------------LQKNAKYLSQLTDAQKAEIKLERQQRNE 141

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 16/63 (25%)
TFAMXP_316944.3 HMG-box_ABF2_IXR1-like_rpt2 53..113 CDD:438828 18/64 (28%)
HMG-box_SF 138..230 CDD:469606 1/4 (25%)

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