DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and Dsp1

DIOPT Version :10

Sequence 1:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:NP_001138203.1 Gene:Dsp1 / 117294 FlyBaseID:FBgn0278608 Length:397 Species:Drosophila melanogaster


Alignment Length:123 Identity:35/123 - (28%)
Similarity:61/123 - (49%) Gaps:15/123 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 PKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAM--KDKSEWEAKAAKAKDDYDRAV 67
            |||.|||:..:.|..|..:|..||...|.::||..|..|..:  :.|.::|:.|.:.|..|:|.:
  Fly   275 PKRSLSAFFWFCNDERNKVKALNPEFGVGDIAKELGRKWSDVDPEVKQKYESMAERDKARYEREM 339

  Fly    68 KEFEANG----------GSSAANGGGAKKRAKPAKKVAKKSKKEESDED---DDDESE 112
            .|::.:|          .|..|....|...|..|::..::.:::..|:|   ||||::
  Fly   340 TEYKTSGKIAMSAPSMQASMQAQAQKAALLAAAAQQQHQQLEEQHDDDDGDGDDDENQ 397

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 21/65 (32%)
Dsp1NP_001138203.1 HMG-box_HMGB_rpt1 182..250 CDD:438794
HMG-box_NHP6-like 262..342 CDD:438792 22/66 (33%)
Blue background indicates that the domain is not in the aligned region.

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