DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and LOC108352140

DIOPT Version :10

Sequence 1:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:XP_017453216.1 Gene:LOC108352140 / 108352140 RGDID:11427469 Length:168 Species:Rattus norvegicus


Alignment Length:73 Identity:23/73 - (31%)
Similarity:41/73 - (56%) Gaps:5/73 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SDKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWR--AMKDKSEWEAKAAKAKDDYD 64
            :|.|::|.|:::|:.....:.||.::|...|.:|||..|.:|.  :..||..:|.:||..:..| 
  Rat    90 ADAPRKPPSSFLLFSQDHFDEIKEQHPNWTVGQVAKAAGRMWARCSEADKIPYEERAAVLRAKY- 153

  Fly    65 RAVKEFEA 72
              ::|.||
  Rat   154 --LEEREA 159

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 19/65 (29%)
LOC108352140XP_017453216.1 HMG-box_SF 8..76 CDD:469606
HMG-box_HMGB_rpt2 95..161 CDD:438795 21/68 (31%)
Blue background indicates that the domain is not in the aligned region.

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