Protein Alignment HmgD and LOC108350839

DIOPT Version :9

• Sequence 1: NP_001163244.1
• Gene: HmgD / 37481
• FlyBaseID: FBgn0004362
• Length: 112
• Species: Drosophila melanogaster
• Sequence 2: XP_017448593.1
• Gene: LOC108350839 / 108350839
• RGDID: 11440908
• Length: 214
• Species: Rattus norvegicus
• Alignment Length: 109
• Identity: 47/109 - (43%)
• Similarity: 67/109 - (61%)
• Gaps: 8/109 - (7%)

  Fly     6 KRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELW--RAMKDKSEWEAKAAKAKDDYDRAVK 68
            |||.||:.|:.:..|..||.|:||:.:.:|||:.||:|  .|:.||...|.||||.|:.|::.:.
  Rat    96 KRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWTNTAVDDKQPCEKKAAKLKEKYEKDIA 160

  Fly    69 EFEANGGSSAANGGGAKKRAKPAKKVAKKSKKEESDEDDDDESE 112
            .:.|.|...||..|..|     |:| :||.|:||.||:|:||.|
  Rat   161 AYRAKGKPDAAKKGVVK-----AEK-SKKKKEEEDDEEDEDEEE 198

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
HmgD	NP_001163244.1	HMGB-UBF_HMG-box	5..68	CDD:238686	28/63 (44%)
LOC108350839	XP_017448593.1	None

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5648
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1641977at2759
OrthoFinder	1	1.000	-	-		FOG0000133
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	1	0.900	-	-		OOG6_100324
Panther	1	1.100	-	-	O	PTHR48112
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	6	5.820