Protein Alignment HmgD and LOC108349258

DIOPT Version :9

• Sequence 1: NP_001163244.1
• Gene: HmgD / 37481
• FlyBaseID: FBgn0004362
• Length: 112
• Species: Drosophila melanogaster
• Sequence 2: XP_017457896.2
• Gene: LOC108349258 / 108349258
• RGDID: 11417756
• Length: 168
• Species: Rattus norvegicus
• Alignment Length: 72
• Identity: 24/72 - (33%)
• Similarity: 40/72 - (55%)
• Gaps: 5/72 - (6%)

  Fly     3 DKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWR--AMKDKSEWEAKAAKAKDDYDR 65
            |.|::|.|:::|:.....|.||.::|...|.:|||..|.:|.  :..||..:|.:||..:..|
  Rat    91 DAPRKPPSSFLLFSQDHFEEIKEQHPNWTVAQVAKAAGRMWARCSEADKIPYEERAAVLRAKY-- 153

  Fly    66 AVKEFEA 72
             ::|.||
  Rat   154 -LEEREA 159

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
HmgD	NP_001163244.1	HMGB-UBF_HMG-box	5..68	CDD:238686	20/64 (31%)
LOC108349258	XP_017457896.2	HMGB-UBF_HMG-box	9..76	CDD:238686
		HMGB-UBF_HMG-box	95..158	CDD:238686	20/65 (31%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1641977at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR48112
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	3	3.020