DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and HMG20A

DIOPT Version :10

Sequence 1:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:NP_060670.1 Gene:HMG20A / 10363 HGNCID:5001 Length:347 Species:Homo sapiens


Alignment Length:113 Identity:26/113 - (23%)
Similarity:54/113 - (47%) Gaps:5/113 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SDKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAM--KDKSEWEAKAAKAKDDYD 64
            |:.||.||:.|:.::|..||.::.:.|.:...|:.:..|..|..:  ::|..:..:|.:.|:.| 
Human   100 SNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERY- 163

  Fly    65 RAVKEFEANGGSSAANGGGAKKRAKPAKKVAKKSKKEESDEDDDDESE 112
              :||.|....:.|......|.:.:...|..::....::..|.:.|:|
Human   164 --MKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAARQATHDHEKETE 209

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 16/65 (25%)
HMG20ANP_060670.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..113 6/12 (50%)
DUF5401 <59..313 CDD:375164 26/113 (23%)
HMG-box_HMG20A 83..186 CDD:438833 22/88 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 179..211 5/31 (16%)

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