DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgD and bbx

DIOPT Version :9

Sequence 1:NP_001163244.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster
Sequence 2:XP_002932333.2 Gene:bbx / 100487237 XenbaseID:XB-GENE-981428 Length:962 Species:Xenopus tropicalis


Alignment Length:72 Identity:19/72 - (26%)
Similarity:36/72 - (50%) Gaps:4/72 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 KPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAMKDKSEWEAKAAKAKDDYDRAVK 68
            :.:||::|::|:....|..:::|:|.:......|...:.| |..|.:|.:.....||:..|..:|
 Frog   140 RARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWW-AYLDPNEKQKYTDMAKEYKDAFMK 203

  Fly    69 EFEANGG 75
               ||.|
 Frog   204 ---ANPG 207

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgDNP_001163244.1 HMGB-UBF_HMG-box 5..68 CDD:238686 15/62 (24%)
bbxXP_002932333.2 SOX-TCF_HMG-box 140..211 CDD:238684 19/72 (26%)
DUF2028 253..384 CDD:286715
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1641977at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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