Protein Alignment HmgD and tfam

DIOPT Version :10

• Sequence 1: NP_726109.1
• Gene: HmgD / 37481
• FlyBaseID: FBgn0004362
• Length: 112
• Species: Drosophila melanogaster
• Sequence 2: XP_002937148.2
• Gene: tfam / 100135718
• XenbaseID: XB-GENE-978256
• Length: 281
• Species: Xenopus tropicalis
• Alignment Length: 102
• Identity: 24/102 - (23%)
• Similarity: 48/102 - (47%)
• Gaps: 2/102 - (1%)

  Fly     2 SDKPKRPLSAYMLWLNSARESIKRENPGIKVTEVAKRGGELWRAM--KDKSEWEAKAAKAKDDYD 64
            |:.|||||:||:.:....|..:.::.|..|:.::.|.....|:.:  .:|..:|..|...:..|.
 Frog    52 SEYPKRPLTAYLRYSIEQRPKLHKQYPEAKMMDLTKIIALEWKGLPSAEKERYEVVANAEQKKYR 116

  Fly    65 RAVKEFEANGGSSAANGGGAKKRAKPAKKVAKKSKKE 101
            ..||::..............::|.:.||:.:.:.|:|
 Frog   117 EEVKQYREKLSPMQLELHREQRRQRLAKRKSVRKKRE 153

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
HmgD	NP_726109.1	HMG-box_SSRP1-like	7..71	CDD:438810	16/65 (25%)
tfam	XP_002937148.2	HMG-box_SF	55..123	CDD:469606	18/67 (27%)
		HMG-box_TFAM_rpt2	140..239	CDD:438803	4/14 (29%)