DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgZ and Hmgb2

DIOPT Version :10

Sequence 1:NP_726106.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster
Sequence 2:NP_032278.1 Gene:Hmgb2 / 97165 MGIID:96157 Length:210 Species:Mus musculus


Alignment Length:108 Identity:47/108 - (43%)
Similarity:67/108 - (62%) Gaps:7/108 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 PKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELW--RGLKDKTEWEQKAIKMKEEYNKAV 68
            ||||.||:.|:.:|.|.:||.::||..:.|.||:.||:|  :..|||..:||||.|:||:|.|.:
Mouse    95 PKRPPSAFFLFCSENRPKIKIEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDI 159

  Fly    69 KEYEANGGTDSGAPKKRKKAAAKPAKKAKKKESSEEEEEDESE 111
            ..|.|.|.:::|     ||...:|....||.|..:||||:|.|
Mouse   160 AAYRAKGKSEAG-----KKGPGRPTGSKKKNEPEDEEEEEEEE 197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgZNP_726106.1 HMG-box_SSRP1-like 8..72 CDD:438810 29/65 (45%)
Hmgb2NP_032278.1 HMG-box_HMGB_rpt1 8..76 CDD:438794
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 71..102 5/6 (83%)
HMG-box_HMGB_rpt2 93..163 CDD:438795 31/67 (46%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 162..210 16/41 (39%)
Required for chemotactic activity. /evidence=ECO:0000250|UniProtKB:P26583 165..180 5/19 (26%)
Blue background indicates that the domain is not in the aligned region.

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