DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgZ and AT5G23405

DIOPT Version :9

Sequence 1:NP_001286694.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster
Sequence 2:NP_851063.1 Gene:AT5G23405 / 832406 AraportID:AT5G23405 Length:149 Species:Arabidopsis thaliana


Alignment Length:102 Identity:22/102 - (21%)
Similarity:47/102 - (46%) Gaps:23/102 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 LSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGL--KDKTEWEQKAIKMKEEYNKAVKEYE 72
            |:.:.:::|..|:..:.|..|:.|.:.:|.|.|:|:.:  .:|.::..||...::|....|:| :
plant    67 LTDFAVFMNHFRKSFRTDYNGALVKEGSKIGWEMWKSMTEDEKKDYLDKAADEEDEDEDTVEE-Q 130

  Fly    73 ANGGTDSGAPKKRKKAAAKPAKKAKKKESSEEEEEDE 109
            |:...|:                    |.:|.:|.|:
plant   131 ADDSDDA--------------------EDNEVKETDD 147

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgZNP_001286694.1 HMG_box 6..71 CDD:395407 15/62 (24%)
AT5G23405NP_851063.1 HMGB-UBF_HMG-box 67..117 CDD:238686 12/49 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5648
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1641977at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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