DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgZ and Ssrp1

DIOPT Version :10

Sequence 1:NP_726106.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster
Sequence 2:XP_008760215.3 Gene:Ssrp1 / 81785 RGDID:621143 Length:802 Species:Rattus norvegicus


Alignment Length:146 Identity:55/146 - (37%)
Similarity:77/146 - (52%) Gaps:42/146 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 PKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGL--KDKTEWEQKAIKMKEEYNKAV 68
            ||||:||||||||.:||:||.|:||..:||::|:.||:|:|:  :.|.||::||...:.||.||:
  Rat   640 PKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAM 704

  Fly    69 KEYEANGGTDS--GAPKKRKKAAAKPAKKA----------------------------------- 96
            ||||...|..|  ...||:||..||..||:                                   
  Rat   705 KEYEGGRGDSSKRDKSKKKKKVKAKLEKKSTPSRGSSSKSSSRQLSDSFKSKEFVSSDESSSGEN 769

  Fly    97 ---KKKESSEEEEEDE 109
               ||:..||:.:|:|
  Rat   770 KSKKKRRRSEDSDEEE 785

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgZNP_726106.1 HMG-box_SSRP1-like 8..72 CDD:438810 35/65 (54%)
Ssrp1XP_008760215.3 POB3 114..573 CDD:227494
HMG-box_SSRP1-like 642..708 CDD:438810 35/65 (54%)
Blue background indicates that the domain is not in the aligned region.

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