DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgZ and Hbp1

DIOPT Version :9

Sequence 1:NP_001286694.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster
Sequence 2:XP_006515290.1 Gene:Hbp1 / 73389 MGIID:894659 Length:570 Species:Mus musculus


Alignment Length:86 Identity:23/86 - (26%)
Similarity:43/86 - (50%) Gaps:9/86 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SGDRPKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGLKDKTEWEQKAIKMKEEYNK 66
            |.::.|||::|:||:..:.|.:..:..||.....|:...|:.|:.:|:    |::.:...|.  |
Mouse   442 SPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMKN----EERRMYTLEA--K 500

  Fly    67 AVKEYEANGGTDSGAPKKRKK 87
            |:.|.:.....|..   |||:
Mouse   501 ALAEEQKRLNPDCW---KRKR 518

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgZNP_001286694.1 HMG_box 6..71 CDD:395407 17/64 (27%)
Hbp1XP_006515290.1 AXH 224..350 CDD:197779
SOX-TCF_HMG-box 445..516 CDD:238684 19/79 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1641977at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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