DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgZ and Hmgb4l5

DIOPT Version :10

Sequence 1:NP_726106.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster
Sequence 2:XP_008771758.1 Gene:Hmgb4l5 / 691030 RGDID:1588662 Length:168 Species:Rattus norvegicus


Alignment Length:72 Identity:21/72 - (29%)
Similarity:42/72 - (58%) Gaps:5/72 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 DRPKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGLK--DKTEWEQKAIKMKEEYNK 66
            |.|::|.|:::|:..:..::||:.:|...|..:||..|.:|....  ||..:|::|..::.:|  
  Rat    91 DAPRKPPSSFLLFSQDHFDEIKEQHPNWTVGQVAKAAGRMWARCSEADKIPYEERAAVLRAKY-- 153

  Fly    67 AVKEYEA 73
             ::|.||
  Rat   154 -LEEREA 159

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgZNP_726106.1 HMG-box_SSRP1-like 8..72 CDD:438810 17/65 (26%)
Hmgb4l5XP_008771758.1 HMG-box_SF 8..76 CDD:469606
HMG-box_HMGB_rpt2 95..160 CDD:438795 19/68 (28%)
Blue background indicates that the domain is not in the aligned region.

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