DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgZ and LOC681067

DIOPT Version :9

Sequence 1:NP_001286694.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster
Sequence 2:XP_006257578.1 Gene:LOC681067 / 681067 RGDID:1584677 Length:168 Species:Rattus norvegicus


Alignment Length:72 Identity:22/72 - (30%)
Similarity:42/72 - (58%) Gaps:5/72 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 DRPKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGLK--DKTEWEQKAIKMKEEYNK 66
            |.|::|.|:::|:..:..|:||:.:|...|..:||..|.:|....  ||..:|::|..::.:|  
  Rat    91 DAPRKPPSSFLLFSQDHFEEIKEQHPNWTVGQVAKAAGRMWARCSEADKIPYEERAAVLRAKY-- 153

  Fly    67 AVKEYEA 73
             ::|.||
  Rat   154 -LEEREA 159

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgZNP_001286694.1 HMG_box 6..71 CDD:395407 18/66 (27%)
LOC681067XP_006257578.1 HMGB-UBF_HMG-box 9..76 CDD:238686
HMGB-UBF_HMG-box 95..158 CDD:238686 18/65 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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