DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgZ and SOX1

DIOPT Version :10

Sequence 1:NP_726106.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster
Sequence 2:NP_005977.2 Gene:SOX1 / 6656 HGNCID:11189 Length:391 Species:Homo sapiens


Alignment Length:93 Identity:24/93 - (25%)
Similarity:49/93 - (52%) Gaps:9/93 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 DRPKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGLK--DKTEWEQKAIKMKEEYNK 66
            ||.|||::|:|:|....|.::.::||....::|:||.|..|:.:.  :|..:..:|.:::..:.|
Human    49 DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMK 113

  Fly    67 AVKEYEANGGTDSGAPKKRKKAAAKPAK 94
            ...:|:..       |:::.|...|..|
Human   114 EHPDYKYR-------PRRKTKTLLKKDK 134

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgZNP_726106.1 HMG-box_SSRP1-like 8..72 CDD:438810 16/65 (25%)
SOX1NP_005977.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..52 2/2 (100%)
HMG-box_SoxB 49..128 CDD:438790 21/85 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 214..249
9aaTAD. /evidence=ECO:0000250|UniProtKB:P41225 342..350
Blue background indicates that the domain is not in the aligned region.

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