DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment HmgZ and hmgb2a

DIOPT Version :10

Sequence 1:NP_726106.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster
Sequence 2:NP_001032501.2 Gene:hmgb2a / 641484 ZFINID:ZDB-GENE-051120-126 Length:213 Species:Danio rerio


Alignment Length:108 Identity:48/108 - (44%)
Similarity:71/108 - (65%) Gaps:7/108 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 PKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGL--KDKTEWEQKAIKMKEEYNKAV 68
            ||||.||:.::.::.|.::|.||||..:.||||:.||:|..|  |:|:.:||||:|:||:|.|.|
Zfish    95 PKRPPSAFFVFCSDHRPKVKGDNPGISIGDIAKKLGEMWSKLSPKEKSPYEQKAMKLKEKYEKDV 159

  Fly    69 KEYEANGGTDSGAPKKRKKAAAKPAKKAKKKESSEEEEEDESE 111
            ..|.|.||...||   :|....:||  .||.|:.::::|||.|
Zfish   160 AAYRAKGGKPDGA---KKGGPGRPA--GKKAEADDDDDEDEDE 197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgZNP_726106.1 HMG-box_SSRP1-like 8..72 CDD:438810 30/65 (46%)
hmgb2aNP_001032501.2 HMG-box_HMGB_rpt1 7..75 CDD:438794
HMG-box_HMGB_rpt2 93..163 CDD:438795 32/67 (48%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.