DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgZ and hmg20b

DIOPT Version :10

Sequence 1:NP_726106.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster
Sequence 2:NP_001018387.1 Gene:hmg20b / 553572 ZFINID:ZDB-GENE-030131-4258 Length:301 Species:Danio rerio


Alignment Length:102 Identity:29/102 - (28%)
Similarity:47/102 - (46%) Gaps:14/102 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 PKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGL--KDKTEWEQKAIKMKEEYNKAV 68
            ||.|::.|:.:|||.||.|:..:|.....:|.||.|..|..|  .||..:..:|.:.|.:|.:.:
Zfish    53 PKAPVTGYVRFLNERREHIRALHPDLPFPEITKRLGAEWSRLAPHDKQRYLDEAERDKMQYAREL 117

  Fly    69 KEYEANGGTDSGAPKKRKKAAAKPAKKAKKKESSEEE 105
            :||:            :.:|......|.:.|....||
Zfish   118 REYQ------------KSEAYQITCAKVQDKRIKREE 142

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgZNP_726106.1 HMG-box_SSRP1-like 8..72 CDD:438810 21/65 (32%)
hmg20bNP_001018387.1 HMG-box_HMG20B 52..136 CDD:438834 26/94 (28%)

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