DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgZ and hmg20b

DIOPT Version :9

Sequence 1:NP_001286694.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster
Sequence 2:NP_001018387.1 Gene:hmg20b / 553572 ZFINID:ZDB-GENE-030131-4258 Length:301 Species:Danio rerio


Alignment Length:102 Identity:29/102 - (28%)
Similarity:47/102 - (46%) Gaps:14/102 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 PKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGL--KDKTEWEQKAIKMKEEYNKAV 68
            ||.|::.|:.:|||.||.|:..:|.....:|.||.|..|..|  .||..:..:|.:.|.:|.:.:
Zfish    53 PKAPVTGYVRFLNERREHIRALHPDLPFPEITKRLGAEWSRLAPHDKQRYLDEAERDKMQYAREL 117

  Fly    69 KEYEANGGTDSGAPKKRKKAAAKPAKKAKKKESSEEE 105
            :||:            :.:|......|.:.|....||
Zfish   118 REYQ------------KSEAYQITCAKVQDKRIKREE 142

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgZNP_001286694.1 HMG_box 6..71 CDD:395407 22/66 (33%)
hmg20bNP_001018387.1 HMGB-UBF_HMG-box 53..118 CDD:238686 22/64 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5648
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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