DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgZ and Sox100B

DIOPT Version :10

Sequence 1:NP_726106.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster
Sequence 2:NP_651839.1 Gene:Sox100B / 45039 FlyBaseID:FBgn0024288 Length:529 Species:Drosophila melanogaster


Alignment Length:92 Identity:25/92 - (27%)
Similarity:50/92 - (54%) Gaps:10/92 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGLK--DKTEWEQKAIKMKEEYNKAVK 69
            |||::|:|:|....|..:.|..|..:.::::|..|:||:.||  ||..:.:.|.|::..:.:...
  Fly    78 KRPMNAFMVWAQAARRVMSKQYPHLQNSELSKSLGKLWKNLKDSDKKPFMEFAEKLRMTHKQEHP 142

  Fly    70 EYEANGGTDSGAPKKRKKAAAKPAKKA 96
            :|:..        .:||||...|::::
  Fly   143 DYKYQ--------PRRKKARVLPSQQS 161

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgZNP_726106.1 HMG-box_SSRP1-like 8..72 CDD:438810 18/65 (28%)
Sox100BNP_651839.1 HMG-box_SoxE 76..150 CDD:438840 20/79 (25%)

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