DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgZ and ssrp1b

DIOPT Version :10

Sequence 1:NP_726106.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster
Sequence 2:XP_001923156.3 Gene:ssrp1b / 449949 ZFINID:ZDB-GENE-041008-209 Length:703 Species:Danio rerio


Alignment Length:107 Identity:53/107 - (49%)
Similarity:78/107 - (72%) Gaps:3/107 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 PKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGL-KD-KTEWEQKAIKMKEEYNKAV 68
            ||||:||||||||.:|::||.:|||..:|:|:|:.||:|:.| || |.||:.||.:.|:||::|:
Zfish   543 PKRPMSAYMLWLNSSRDRIKSENPGISITEISKKAGEMWKQLGKDKKEEWDGKAEEAKKEYDRAM 607

  Fly    69 KEYEANGGTDSGAPKK-RKKAAAKPAKKAKKKESSEEEEEDE 109
            :||..:||..||:.|| |||...:..:|.|:|..:..|:|.|
Zfish   608 REYRESGGGSSGSSKKERKKKRGRNEEKRKRKSGAGREKEKE 649

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgZNP_726106.1 HMG-box_SSRP1-like 8..72 CDD:438810 35/65 (54%)
ssrp1bXP_001923156.3 POB3 21..514 CDD:227494
HMG-box_SSRP1-like 545..611 CDD:438810 35/65 (54%)
Blue background indicates that the domain is not in the aligned region.

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