DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgZ and tHMG2

DIOPT Version :9

Sequence 1:NP_001286694.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster
Sequence 2:NP_001163689.1 Gene:tHMG2 / 42651 FlyBaseID:FBgn0038979 Length:134 Species:Drosophila melanogaster


Alignment Length:74 Identity:29/74 - (39%)
Similarity:50/74 - (67%) Gaps:3/74 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 GDRPKRPLSAYMLWLNET-REQIKKDNPGSKVTDIAKRGGELWRGLKD--KTEWEQKAIKMKEEY 64
            |.|||:|:||:|||:|.| |:.|:.::|...|.:::.:|||:||.:.|  |..|::.|.|...||
  Fly     6 GARPKKPMSAFMLWMNSTGRKNIRAEHPDFSVQEVSVKGGEMWRAMADEHKIVWQESASKAMAEY 70

  Fly    65 NKAVKEYEA 73
            .:.::::.|
  Fly    71 KEKLEKWNA 79

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgZNP_001286694.1 HMG_box 6..71 CDD:395407 26/67 (39%)
tHMG2NP_001163689.1 HMGB-UBF_HMG-box 9..75 CDD:238686 26/65 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 57 1.000 Domainoid score I3986
eggNOG 1 0.900 - - E1_COG5648
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 55 1.000 Inparanoid score I2031
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1641977at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.870

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