DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgZ and tHMG2

DIOPT Version :10

Sequence 1:NP_726106.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster
Sequence 2:NP_001163689.1 Gene:tHMG2 / 42651 FlyBaseID:FBgn0038979 Length:134 Species:Drosophila melanogaster


Alignment Length:74 Identity:29/74 - (39%)
Similarity:50/74 - (67%) Gaps:3/74 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 GDRPKRPLSAYMLWLNET-REQIKKDNPGSKVTDIAKRGGELWRGLKD--KTEWEQKAIKMKEEY 64
            |.|||:|:||:|||:|.| |:.|:.::|...|.:::.:|||:||.:.|  |..|::.|.|...||
  Fly     6 GARPKKPMSAFMLWMNSTGRKNIRAEHPDFSVQEVSVKGGEMWRAMADEHKIVWQESASKAMAEY 70

  Fly    65 NKAVKEYEA 73
            .:.::::.|
  Fly    71 KEKLEKWNA 79

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgZNP_726106.1 HMG-box_SSRP1-like 8..72 CDD:438810 24/66 (36%)
tHMG2NP_001163689.1 HMG-box_SSRP1-like 11..78 CDD:438810 24/66 (36%)

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