DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgZ and hmg20b

DIOPT Version :9

Sequence 1:NP_001286694.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster
Sequence 2:XP_017947143.1 Gene:hmg20b / 394538 XenbaseID:XB-GENE-5809048 Length:327 Species:Xenopus tropicalis


Alignment Length:99 Identity:32/99 - (32%)
Similarity:53/99 - (53%) Gaps:9/99 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 PKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGL--KDKTEWEQKAIKMKEEYNKAV 68
            ||.|::.|:.:|||.||||:..:|.....:|.|..|..|..|  .:|..:..:|.:.|::|.|.:
 Frog    68 PKAPVTGYVRFLNERREQIRAQHPDLPFPEITKMLGAEWSTLPPHEKQRYLDEAERDKQQYMKEL 132

  Fly    69 KEYEANGGTDSGAPKKRKKAAAKPAKKAKKKESS 102
            :||:.:......|.|.::       ||.||:|:|
 Frog   133 REYQQSEAYKMCAEKIQE-------KKIKKEETS 159

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgZNP_001286694.1 HMG_box 6..71 CDD:395407 22/66 (33%)
hmg20bXP_017947143.1 HMGB-UBF_HMG-box 68..133 CDD:238686 22/64 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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