DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgZ and ssrp1a

DIOPT Version :10

Sequence 1:NP_726106.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster
Sequence 2:NP_997967.2 Gene:ssrp1a / 386844 ZFINID:ZDB-GENE-031118-9 Length:705 Species:Danio rerio


Alignment Length:106 Identity:54/106 - (50%)
Similarity:77/106 - (72%) Gaps:4/106 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 PKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGL-KD-KTEWEQKAIKMKEEYNKAV 68
            ||||:||||||||..||:||.:|||..:|:|:|:.||:|:.| || |.||::||.:.|.:|.||:
Zfish   546 PKRPMSAYMLWLNGNRERIKSENPGISITEISKKAGEMWKQLGKDKKEEWDKKAEEAKRQYEKAM 610

  Fly    69 KEYEANGGTDSGAPKKRKKAAAKPAKKAKKKESSEEEEEDE 109
            |||:.:||..:.|.|::||...|  .:||||...|:|::.|
Zfish   611 KEYKESGGGAAAATKEKKKKGGK--VEAKKKSGGEKEKKKE 649

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgZNP_726106.1 HMG-box_SSRP1-like 8..72 CDD:438810 37/65 (57%)
ssrp1aNP_997967.2 POB3 21..512 CDD:227494
HMG-box_SSRP1-like 548..614 CDD:438810 37/65 (57%)
Blue background indicates that the domain is not in the aligned region.

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