DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgZ and ubtf

DIOPT Version :9

Sequence 1:NP_001286694.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster
Sequence 2:NP_001005395.1 Gene:ubtf / 368509 ZFINID:ZDB-GENE-030616-252 Length:735 Species:Danio rerio


Alignment Length:139 Identity:30/139 - (21%)
Similarity:60/139 - (43%) Gaps:29/139 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SGDRPKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGLKDKTEWEQKAIKM------ 60
            |.::||.|:||..::..|.|.::|::.|.....::.:....:|..|.||.:.:.|.::|      
Zfish   396 SAEKPKPPISAMFIFSEEKRPKLKQEKPELSDMELTRLLARMWNELTDKKKEKYKTLEMALKAEA 460

  Fly    61 ----KEEYNK---------------AVKEYEANGGTDSGAPKKRKKAAAKPAKKAKK----KESS 102
                :||..|               .:.:|.|....|....:|..:|.....:|.:|    |:::
Zfish   461 EKQSREEKGKLPETPKTAQEIWQQSVIGDYLARFKNDRAKAQKTMEATWNTMEKKEKIVWIKKAA 525

  Fly   103 EEEEEDESE 111
            |:::..|.|
Zfish   526 EDQKRYERE 534

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgZNP_001286694.1 HMG_box 6..71 CDD:395407 18/89 (20%)
ubtfNP_001005395.1 HMGB-UBF_HMG-box 104..168 CDD:238686
HMGB-UBF_HMG-box 189..254 CDD:238686
HMGB-UBF_HMG-box 292..351 CDD:238686
HMGB-UBF_HMG-box 400..463 CDD:238686 15/62 (24%)
HMG_box_5 469..552 CDD:291548 12/66 (18%)
HMGB-UBF_HMG-box 557..621 CDD:238686
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5648
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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