DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgZ and Hmg20b

DIOPT Version :9

Sequence 1:NP_001286694.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster
Sequence 2:XP_006241006.1 Gene:Hmg20b / 362825 RGDID:1309235 Length:344 Species:Rattus norvegicus


Alignment Length:99 Identity:30/99 - (30%)
Similarity:50/99 - (50%) Gaps:9/99 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 PKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGLK--DKTEWEQKAIKMKEEYNKAV 68
            ||.|::.|:.:|||.||||:..:|.....:|.|..|..|..|:  :|..:..:|.|.|::|.|.:
  Rat    96 PKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKEL 160

  Fly    69 KEYEANGGTDSGAPKKRKKAAAKPAKKAKKKESS 102
            ..|:.:........|.::       .|.||::||
  Rat   161 WAYQQSEAYKVCTEKIQE-------NKIKKEDSS 187

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgZNP_001286694.1 HMG_box 6..71 CDD:395407 23/66 (35%)
Hmg20bXP_006241006.1 NHP6B 26..229 CDD:227935 30/99 (30%)
HMGB-UBF_HMG-box 96..160 CDD:238686 23/63 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5648
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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