DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgZ and Hmg20b

DIOPT Version :10

Sequence 1:NP_726106.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster
Sequence 2:XP_063119784.1 Gene:Hmg20b / 362825 RGDID:1309235 Length:407 Species:Rattus norvegicus


Alignment Length:99 Identity:30/99 - (30%)
Similarity:50/99 - (50%) Gaps:9/99 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 PKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGLK--DKTEWEQKAIKMKEEYNKAV 68
            ||.|::.|:.:|||.||||:..:|.....:|.|..|..|..|:  :|..:..:|.|.|::|.|.:
  Rat    96 PKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKEL 160

  Fly    69 KEYEANGGTDSGAPKKRKKAAAKPAKKAKKKESS 102
            ..|:.:........|.::       .|.||::||
  Rat   161 WAYQQSEAYKVCTEKIQE-------NKIKKEDSS 187

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgZNP_726106.1 HMG-box_SSRP1-like 8..72 CDD:438810 21/65 (32%)
Hmg20bXP_063119784.1 None

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