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Protein Alignment HmgZ and Hmgxb4
DIOPT Version :9
Sequence 1: | NP_001286694.1 |
Gene: | HmgZ / 37480 |
FlyBaseID: | FBgn0010228 |
Length: | 111 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001100882.1 |
Gene: | Hmgxb4 / 307667 |
RGDID: | 1305783 |
Length: | 598 |
Species: | Rattus norvegicus |
Alignment Length: | 98 |
Identity: | 31/98 - (31%) |
Similarity: | 52/98 - (53%) |
Gaps: | 14/98 - (14%) |
- Green bases have known domain annotations that are detailed below.
Fly 3 GDRPKRP-LSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGL--KDKTEWEQKAIKMKEEY 64
|::||:. :|||.::..|.|..|..|:||....:::|:..|:|:.| |||..|:|||..::.:.
Rat 396 GEKPKKKNMSAYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQLPEKDKLIWKQKAQYLQHKQ 460
Fly 65 NKAVKEYEANGGTDSGAPKKRKKAAAKPAKKAK 97
||| .....|||.::|:...|.:
Rat 461 NKA-----------EATTVKRKASSAEGTMKVR 482
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
HmgZ | NP_001286694.1 |
HMG_box |
6..71 |
CDD:395407 |
25/67 (37%) |
Hmgxb4 | NP_001100882.1 |
DUF4171 |
107..225 |
CDD:290491 |
|
HMG-box |
400..463 |
CDD:238037 |
22/62 (35%) |
Blue background indicates that the domain is not in
the aligned region.
|
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
1 |
1.010 |
- |
- |
|
D1641977at2759 |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
1 | 1.010 |
|
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