DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgZ and Sox8

DIOPT Version :10

Sequence 1:NP_726106.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster
Sequence 2:NP_001100459.1 Gene:Sox8 / 302993 RGDID:1309072 Length:463 Species:Rattus norvegicus


Alignment Length:102 Identity:24/102 - (23%)
Similarity:49/102 - (48%) Gaps:15/102 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGL--KDKTEWEQKAIKMKEEYNKAVK 69
            |||::|:|:|....|.::....|.....:::|..|:|||.|  .:|..:.::|.:::.::.|...
  Rat   100 KRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLSESEKRPFVEEAERLRVQHKKDHP 164

  Fly    70 EYEANGGTDSGAPKKRKKAAAKPAKKAKKKESSEEEE 106
            :|:..       |::||..      |..:.:|....|
  Rat   165 DYKYQ-------PRRRKSV------KTGRSDSDSGTE 188

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgZNP_726106.1 HMG-box_SSRP1-like 8..72 CDD:438810 16/65 (25%)
Sox8NP_001100459.1 Sox_N 18..86 CDD:463586
HMG-box_SoxE 98..172 CDD:438840 19/78 (24%)
Blue background indicates that the domain is not in the aligned region.

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