DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgZ and Ubtf

DIOPT Version :10

Sequence 1:NP_726106.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster
Sequence 2:NP_001391562.1 Gene:Ubtf / 21429 MGIID:98512 Length:789 Species:Mus musculus


Alignment Length:106 Identity:27/106 - (25%)
Similarity:47/106 - (44%) Gaps:15/106 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 DRPKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGLKDK--TEWEQKAIKMKEEYNK 66
            |.|::|.:...||....::...|..|.:...::....|:.|..|.||  .:|..||::.::||.:
Mouse   194 DIPEKPKTPQQLWYTHEKKVYLKVRPDATTKEVKDSLGKQWSQLSDKKRLKWIHKALEQRKEYEE 258

  Fly    67 AVKEY-----EAN----GGTDSGAPKKRK----KAAAKPAK 94
            .:::|     |.|    |.|.|...|..:    |...:|.|
Mouse   259 IMRDYIQKHPELNISEEGITKSTLTKAERQLKDKFDGRPTK 299

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgZNP_726106.1 HMG-box_SSRP1-like 8..72 CDD:438810 16/70 (23%)
UbtfNP_001391562.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
HMG-box_UBF1_rpt1-like 109..185 CDD:438814
HMG-box_UBF1_rpt2 196..270 CDD:438815 17/73 (23%)
HMG-box_UBF1_rpt3 297..379 CDD:438816 2/3 (67%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 370..411
HMG-box_UBF1_rpt4 405..470 CDD:438817
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 456..487
HMG_box_5 479..562 CDD:434287
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 546..576
HMG-box_UBF1_rpt6-like 565..650 CDD:438819
Blue background indicates that the domain is not in the aligned region.

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