DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment HmgZ and Ssrp1

DIOPT Version :10

Sequence 1:NP_726106.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster
Sequence 2:NP_892035.2 Gene:Ssrp1 / 20833 MGIID:107912 Length:708 Species:Mus musculus


Alignment Length:131 Identity:56/131 - (42%)
Similarity:77/131 - (58%) Gaps:25/131 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 PKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGL--KDKTEWEQKAIKMKEEYNKAV 68
            ||||:||||||||.:||:||.|:||..:||::|:.||:|:|:  :.|.||::||...:.||.||:
Mouse   547 PKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKAEDARREYEKAM 611

  Fly    69 KEYEANGGTDS--GAPKKRKKAAAKPAKKA-------------------KKKE--SSEEEEEDES 110
            ||||...|..|  ...||:||..||..||:                   |.||  ||:|....|:
Mouse   612 KEYEGGRGDSSKRDKSKKKKKVKAKMEKKSTPSRGSSSKSSSRQLSDSFKSKEFVSSDESSSGEN 676

  Fly   111 E 111
            :
Mouse   677 K 677

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgZNP_726106.1 HMG-box_SSRP1-like 8..72 CDD:438810 35/65 (54%)
Ssrp1NP_892035.2 POB3 21..480 CDD:227494
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 458..708 56/131 (43%)
HMG-box_SSRP1-like 549..615 CDD:438810 35/65 (54%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.