DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgZ and gei-3

DIOPT Version :10

Sequence 1:NP_726106.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster
Sequence 2:NP_001076772.1 Gene:gei-3 / 184597 WormBaseID:WBGene00001560 Length:1405 Species:Caenorhabditis elegans


Alignment Length:76 Identity:20/76 - (26%)
Similarity:40/76 - (52%) Gaps:4/76 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSGDRP--KRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGL--KDKTEWEQKAIKMK 61
            :|.:.|  :||::|:|::....|..:.:..|......::|..||.|..|  ..|.|:.:.|.::|
 Worm   836 VSANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSLAADQKAEYHKLATQVK 900

  Fly    62 EEYNKAVKEYE 72
            |.:.||..:::
 Worm   901 EAHFKAHPDWK 911

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgZNP_726106.1 HMG-box_SSRP1-like 8..72 CDD:438810 18/65 (28%)
gei-3NP_001076772.1 DUF4819 194..275 CDD:465014
HMG-box_CIC-like 842..918 CDD:438806 18/70 (26%)
Blue background indicates that the domain is not in the aligned region.

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