DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgZ and sox-4

DIOPT Version :10

Sequence 1:NP_726106.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster
Sequence 2:NP_001335567.1 Gene:sox-4 / 182547 WormBaseID:WBGene00015716 Length:260 Species:Caenorhabditis elegans


Alignment Length:104 Identity:29/104 - (27%)
Similarity:54/104 - (51%) Gaps:13/104 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 RPKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGLK--DKTEWEQKAIKMKEEYNKA 67
            |.|||::|:|:|..:.|:||.........:||:|..|..||.::  :|..:.::|.:::||:..|
 Worm   120 RIKRPMNAFMVWSQQRRQQIAATGQKFHNSDISKMLGAEWRKMEEHEKVPFVERAKQLREEHFNA 184

  Fly    68 VKEYEANGGTDSGAPKKRKKAAAKPAKKAKKKESSEEEE 106
            ..:|...       |::||:.    .|.|...:|:..:|
 Worm   185 HPDYVYR-------PRRRKRV----EKSAGSVDSNSADE 212

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgZNP_726106.1 HMG-box_SSRP1-like 8..72 CDD:438810 19/65 (29%)
sox-4NP_001335567.1 HMG-box_SOX 120..194 CDD:438820 23/80 (29%)

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