DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgZ and penr-1

DIOPT Version :10

Sequence 1:NP_726106.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster
Sequence 2:NP_504410.1 Gene:penr-1 / 178915 WormBaseID:WBGene00015075 Length:317 Species:Caenorhabditis elegans


Alignment Length:44 Identity:17/44 - (38%)
Similarity:24/44 - (54%) Gaps:6/44 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 NGGTDSGAPKKRKKA---AAKPAKKAKKK---ESSEEEEEDESE 111
            |......:|||.||:   ||..:.||:|:   :||:.|.||..|
 Worm     6 NASNAGSSPKKEKKSETFAALKSVKAEKRPAADSSDSEPEDFEE 49

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgZNP_726106.1 HMG-box_SSRP1-like 8..72 CDD:438810
penr-1NP_504410.1 None
Blue background indicates that the domain is not in the aligned region.

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