DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgZ and hmg-5

DIOPT Version :10

Sequence 1:NP_726106.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster
Sequence 2:NP_501245.1 Gene:hmg-5 / 177543 WormBaseID:WBGene00001975 Length:204 Species:Caenorhabditis elegans


Alignment Length:71 Identity:21/71 - (29%)
Similarity:36/71 - (50%) Gaps:7/71 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 RPKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGLKD--KTEWEQKAIKMKEEYNKA 67
            ||..|.|||.|::.|     |....|.:..:..|.....|:...|  |.::..:|.|:|:||:..
 Worm   131 RPSVPPSAYALFIKE-----KLSGAGMESKEKMKEAVAQWKAFTDSQKKKYTDEAKKLKDEYHVV 190

  Fly    68 VKEYEA 73
            ::::||
 Worm   191 LQKWEA 196

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgZNP_726106.1 HMG-box_SSRP1-like 8..72 CDD:438810 17/65 (26%)
hmg-5NP_501245.1 HMG-box_SF 35..81 CDD:438789
HMG-box_SF 132..197 CDD:469606 20/70 (29%)
Blue background indicates that the domain is not in the aligned region.

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