DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgZ and hmg-20

DIOPT Version :10

Sequence 1:NP_726106.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster
Sequence 2:NP_493178.1 Gene:hmg-20 / 173124 WormBaseID:WBGene00012209 Length:386 Species:Caenorhabditis elegans


Alignment Length:109 Identity:25/109 - (22%)
Similarity:55/109 - (50%) Gaps:12/109 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 PKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGL--KDKTEWEQKAIKMKEEYNKAV 68
            |||..|.|:.::...|....|.....:..:|:....  |:.|  :::..::|:|.:.|.:|.:.:
 Worm   127 PKRNRSGYVHFIIHRRASYSKAVMSQREINISLAAD--WQKLTAEERIPFQQRADEEKVKYLELM 189

  Fly    69 KEYEANGGTDSGAPKKRKKA-----AAKPAKKAKKKESSEEEEE 107
            :||:.   |||....::|:|     .:..:|.|||:..::.:::
 Worm   190 EEYKK---TDSHKEFQKKRAKFLSSQSNGSKNAKKRRQADSDDD 230

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgZNP_726106.1 HMG-box_SSRP1-like 8..72 CDD:438810 13/65 (20%)
hmg-20NP_493178.1 HMG-box_SF 126..204 CDD:469606 19/81 (23%)

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