DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgZ and sox10

DIOPT Version :10

Sequence 1:NP_726106.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster
Sequence 2:NP_571950.1 Gene:sox10 / 140616 ZFINID:ZDB-GENE-011207-1 Length:485 Species:Danio rerio


Alignment Length:114 Identity:32/114 - (28%)
Similarity:56/114 - (49%) Gaps:19/114 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SGDRP--KRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGLK--DKTEWEQKAIKMKE 62
            |..:|  |||::|:|:|....|.::....|.....:::|..|:|||.|.  ||..:.::|.::::
Zfish   102 SKSKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNETDKRPFIEEAERLRK 166

  Fly    63 EYNKAVKEYEANGGTDSGAPKKRKKAAAKPAKKAKKKESSEEEEEDESE 111
            ::.|...||:..       |::||.  .||.      .|||.:...|.|
Zfish   167 QHKKDYPEYKYQ-------PRRRKN--GKPG------SSSEADAHSEGE 200

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgZNP_726106.1 HMG-box_SSRP1-like 8..72 CDD:438810 18/65 (28%)
sox10NP_571950.1 Sox_N 13..97 CDD:463586
HMG-box_SoxE 107..181 CDD:438840 21/80 (26%)
Blue background indicates that the domain is not in the aligned region.

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