DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgZ and Ssrp

DIOPT Version :10

Sequence 1:NP_726106.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster
Sequence 2:XP_320213.4 Gene:Ssrp / 1280366 VectorBaseID:AGAMI1_014024 Length:728 Species:Anopheles gambiae


Alignment Length:155 Identity:61/155 - (39%)
Similarity:83/155 - (53%) Gaps:51/155 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 PKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGLKDKTEWEQKAIKMKEEYNKAVKE 70
            ||||.:|:||::|.:|||||||.||..:|:::|:|||||:.||||.|||.||.|.|::|.:|:..
Mosquito   567 PKRPSTAFMLFMNASREQIKKDFPGLSITEMSKKGGELWKELKDKKEWEAKAAKAKDDYTEAMAA 631

  Fly    71 YEANGGTDSGAPK--KRKKAAAKPA---------------------------------------- 93
            ::|:||...|..|  ||||:.||.:                                        
Mosquito   632 WKASGGGTDGGDKGEKRKKSTAKKSSDSAMKGSGFKSKEFIEGDDSSSDEDTKKDTKKSKATEST 696

  Fly    94 ---KKAKKKES------SEEEEEDE 109
               ||:||.:|      ||||||||
Mosquito   697 DKKKKSKKSDSESEMSASEEEEEDE 721

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgZNP_726106.1 HMG-box_SSRP1-like 8..72 CDD:438810 35/63 (56%)
SsrpXP_320213.4 POB3 20..494 CDD:227494
HMG-box_SSRP1-like 569..633 CDD:438810 35/63 (56%)
Blue background indicates that the domain is not in the aligned region.

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