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Protein Alignment HmgZ and HMG20B
DIOPT Version :9
Sequence 1: | NP_001286694.1 |
Gene: | HmgZ / 37480 |
FlyBaseID: | FBgn0010228 |
Length: | 111 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_006330.2 |
Gene: | HMG20B / 10362 |
HGNCID: | 5002 |
Length: | 317 |
Species: | Homo sapiens |
Alignment Length: | 99 |
Identity: | 30/99 - (30%) |
Similarity: | 52/99 - (52%) |
Gaps: | 9/99 - (9%) |
- Green bases have known domain annotations that are detailed below.
Fly 6 PKRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGLK--DKTEWEQKAIKMKEEYNKAV 68
||.|::.|:.:|||.||||:..:|.....:|.|..|..|..|: :|..:..:|.:.|::|.|.:
Human 70 PKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKEL 134
Fly 69 KEYEANGGTDSGAPKKRKKAAAKPAKKAKKKESS 102
:.|:.:........|.:: ||.||::||
Human 135 RAYQQSEAYKMCTEKIQE-------KKIKKEDSS 161
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
HmgZ | NP_001286694.1 |
HMG_box |
6..71 |
CDD:395407 |
22/66 (33%) |
Software error:
Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.
For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message
and the time and date of the error.