DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgZ and sox8

DIOPT Version :10

Sequence 1:NP_726106.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster
Sequence 2:XP_002932315.2 Gene:sox8 / 100497725 XenbaseID:XB-GENE-480865 Length:466 Species:Xenopus tropicalis


Alignment Length:102 Identity:26/102 - (25%)
Similarity:51/102 - (50%) Gaps:15/102 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGL--KDKTEWEQKAIKMKEEYNKAVK 69
            |||::|:|:|....|.::....|.....:::|..|:|||.|  .:|..:.::|.:::.::.|...
 Frog   106 KRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLSENEKRPFVEEAERLRVQHKKDHP 170

  Fly    70 EYEANGGTDSGAPKKRKKAAAKPAKKAKKKESSEEEE 106
            :|:..       |::||.|      ||.:.:|....|
 Frog   171 DYKYQ-------PRRRKSA------KAGQSDSDSGAE 194

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgZNP_726106.1 HMG-box_SSRP1-like 8..72 CDD:438810 16/65 (25%)
sox8XP_002932315.2 Sox_N <39..94 CDD:463586
HMG-box_SoxE 104..178 CDD:438840 19/78 (24%)
DUF5585 <308..>466 CDD:465521
Blue background indicates that the domain is not in the aligned region.

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