DRSC/TRiP Functional Genomics Resources

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Protein Alignment HmgZ and sox5

DIOPT Version :10

Sequence 1:NP_726106.1 Gene:HmgZ / 37480 FlyBaseID:FBgn0010228 Length:111 Species:Drosophila melanogaster
Sequence 2:XP_031753364.1 Gene:sox5 / 100038209 XenbaseID:XB-GENE-487032 Length:763 Species:Xenopus tropicalis


Alignment Length:68 Identity:15/68 - (22%)
Similarity:39/68 - (57%) Gaps:2/68 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KRPLSAYMLWLNETREQIKKDNPGSKVTDIAKRGGELWRGLK--DKTEWEQKAIKMKEEYNKAVK 69
            |||::|:|:|..:.|.:|.:..|....::|:|..|..|:.:.  :|..:.::..::.:::.:...
 Frog   558 KRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYP 622

  Fly    70 EYE 72
            :|:
 Frog   623 DYK 625

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HmgZNP_726106.1 HMG-box_SSRP1-like 8..72 CDD:438810 13/65 (20%)
sox5XP_031753364.1 HMG-box_EGL13-like 555..632 CDD:438848 15/68 (22%)

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