DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CngB and Cngb1

DIOPT Version :10

Sequence 1:NP_611607.2 Gene:CngB / 37479 FlyBaseID:FBgn0266346 Length:1040 Species:Drosophila melanogaster
Sequence 2:NP_113997.2 Gene:Cngb1 / 83686 RGDID:621809 Length:1338 Species:Rattus norvegicus


Alignment Length:1043 Identity:305/1043 - (29%)
Similarity:484/1043 - (46%) Gaps:201/1043 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 EPEASASLLKSSPNILENFAYDEFQPIQTNHPLLKRMATTPVAQSGSQSSSSSTSSTRKAEPKFC 82
            |.||...:.:..|.|.|....:..:..:......::.......:...:..........|.|.|  
  Rat   346 ESEAMVEMPRELPQIQEEQEEENEEKEEEEEEKEEKEEKEEEEEKEEEEKREEEKKKEKEEEK-- 408

  Fly    83 DTLERHAFMRNVINQQPESTRRYSTPGEKEAQVRRSLEEITKDLKEIEQFVSATEELMQREKEQE 147
              .|:....:....::.|...:....|::|.:.:...||..|:.||.|:    .||..:.|||::
  Rat   409 --KEKEEEEKGEEEEKEEKEEKEEEEGKEEKEEKEEKEEEEKEEKEEEE----KEEKEEEEKEEK 467

  Fly   148 QMMYSNKENKCPSPVKRVTYKINAYKAPPRRHRPGSPRFYHSRLYFRNGKIGCVDSTEHQNNVGA 212
            :.....:|.:                                                       
  Rat   468 EEEEEEEEEE------------------------------------------------------- 477

  Fly   213 THALVKHILHHEKPLVSPDSVRRVLEQDSFEMVPLPGAVPEIVPDPIAIQRAEELAAATGQVVLP 277
                     ..|:|:|..||. .|::.|               .|...::||:...|:..::...
  Rat   478 ---------EEEEPIVLLDSC-LVVQAD---------------VDQCQLERAQPETASIQELPEE 517

  Fly   278 KEEEEEEKSSPLHQVESQPDVDEDEQDVQ---------ICYNESPELQNEDRN--------ERT- 324
            :||:||||.....:.|.:.:.:|:|:..:         ....|.||||.||.:        |.| 
  Rat   518 EEEKEEEKKEEEEEKEEEEEKEEEEEKEEEGEATNSTVPATKEHPELQVEDTDAEAGPLIPEETI 582

  Fly   325 ---QRTP----------------------------------SINESEIVAVDEPDTEMNSDVDHR 352
               :|.|                                  |..||.:||..:|.|...:|.:.|
  Rat   583 PPPERPPVSPAKSDTLAVPGAATHRKKLPSQDDEAEELKALSPAESPVVAWSDPTTPQEADGEDR 647

  Fly   353 KPSSAGSLDSQGQQFLRDQVRHLVRRFTARANKVKSRIELPPTPSSSSTVSSPSPPPTKSLHPS- 416
            ..|:|    ||....:.|:::.||:.|..|..|||.::   ..|..:|...||.|.|.|....| 
  Rat   648 AASTA----SQNSAIINDRLQELVKMFKERTEKVKEKL---IDPDVTSDEESPKPSPAKKAPDSA 705

  Fly   417 PQHKVRLVPAGQSPHRGRLFEADTPRSNVWLCSSLC--------GANNDERTLDP-QGKIYISWL 472
            |..|.....|.:..|               .|..||        ......:::|| ...:||.||
  Rat   706 PAQKPAEAEAAEEEH---------------YCDMLCCKFKRRPWKMYQFPQSIDPLTNLMYILWL 755

  Fly   473 CVVSLSFLYNAWVIPLRASFPFQTKENTNIWLACDFCADIIYLLDVVFFKHRVMYLFEGFWVKNK 537
            ..|.|::.:|.|:||:|.:||:|..:|.::||..|:..|.|||||:..|:.|:.::..|..:.:|
  Rat   756 FFVVLAWNWNCWLIPVRWAFPYQRADNIHLWLLMDYLCDFIYLLDITVFQMRLQFVKGGDIITDK 820

  Fly   538 NLTRKNYMRKLQFKLDLLALLPLELLYFKLGTQAVWLRFPRFFKIQSFWEVFRLLDRVISSPHFV 602
            ...|.||::..:||:|||.||||:.||.|||...: ||.||..|..:|:|....|:.::|..:..
  Rat   821 KEMRNNYLKSQRFKMDLLCLLPLDFLYLKLGVNPL-LRLPRCLKYMAFFEFNNRLEAILSKAYVY 884

  Fly   603 RVAKTLTYMLYMIHITAALYYAYSDYQGLGQNRWVFSGKGHPYVRCFAFATKTATSIGKNPKPER 667
            ||.:|..|:||.:|:.:.|||..|.:||:|...||:.|.|:.|:||:.:|.||..:||..|.|:.
  Rat   885 RVIRTTAYLLYSLHLNSCLYYWASAFQGIGSTHWVYDGVGNSYIRCYYWAVKTLITIGGLPDPQT 949

  Fly   668 QGEYVFMTVAWLMGVFVFALLIGQIRDIISTATRNKHEYRQLEDETLEYMRRLNLSQEVQSRVKM 732
            ..|.||..:.:..|||.|:::|||:||::..||..:..||...|.|::||....:.:.||:|||.
  Rat   950 LFEIVFQLLNYFTGVFAFSVMIGQMRDVVGAATAGQTYYRSCMDSTVKYMNFYKIPRSVQNRVKT 1014

  Fly   733 WFQFTWEQQRTLDESNILDALPINLKTDIAISVHIQTLSKVQLFADCEEALLRDLVLKLRAVTFL 797
            |:::||..|..||||.::..||..::.|:||.|:...:|||.||..|:..::.|::.:||:|.:|
  Rat  1015 WYEYTWHSQGMLDESELMVQLPDKMRLDLAIDVNYNIVSKVALFQGCDRQMIFDMLKRLRSVVYL 1079

  Fly   798 PGDFVCRKGEVGREMYIVKLGQVQVMGGPSSDVVLATLTEGSVFGEISLLGINGADRRTADVRSK 862
            |.|:||:|||:||||||::.|||||:|||....||.||..||||||||||.:.|.:||||:|.:.
  Rat  1080 PNDYVCKKGEIGREMYIIQAGQVQVLGGPDGKAVLVTLKAGSVFGEISLLAVGGGNRRTANVVAH 1144

  Fly   863 GYSNLFVLSKSDLNEVIAYYPTAQAILKKRARQLMRKNAAREREEERERARSALQADVVIGNPKT 927
            |::|||:|.|.||||::.:||.:|.:|:|:||:::|.|  .:.:||:         .|:|..|:.
  Rat  1145 GFTNLFILDKKDLNEILVHYPESQKLLRKKARRMLRNN--NKPKEEK---------SVLILPPRA 1198

  Fly   928 PETAPKLLQTVIQALPFESPAVVLITRGSK-----RMR-RKRQSVQMETIVEPKMEVTGAAETQD 986
              ..|||....:.|.....|      ||:|     .:| |.::...:|.....:..:..|..:|:
  Rat  1199 --GTPKLFNAALAAAGKMGP------RGAKGGKLAHLRARLKELAALEAAARQQQLLEQAKSSQE 1255

  Fly   987 QKG 989
            ..|
  Rat  1256 AGG 1258

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CngBNP_611607.2 PLN03192 411..>891 CDD:215625 198/489 (40%)
CAP_ED 775..889 CDD:237999 62/113 (55%)
Cngb1NP_113997.2 PLN03192 743..>1129 CDD:215625 167/386 (43%)
CAP_ED 1057..1166 CDD:237999 60/108 (56%)

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