DRSC/TRiP Functional Genomics Resources

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Protein Alignment CngB and Kcnh1

DIOPT Version :10

Sequence 1:NP_611607.2 Gene:CngB / 37479 FlyBaseID:FBgn0266346 Length:1040 Species:Drosophila melanogaster
Sequence 2:XP_017454422.1 Gene:Kcnh1 / 65198 RGDID:68398 Length:989 Species:Rattus norvegicus


Alignment Length:716 Identity:159/716 - (22%)
Similarity:277/716 - (38%) Gaps:169/716 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   410 TKSLHPSPQHKVRLVPA---GQSPHR-GRLFEADTPRSNVWLCSSLCGANNDERTLDPQGKIY-- 468
            |::|..|.....:|.|:   |::.|: .||.|.      :.|.|.:......|....|...|.  
  Rat   155 TRALTSSRGVLQQLAPSVQKGENVHKHSRLAEV------LQLGSDILPQYKQEAPKTPPHIILHY 213

  Fly   469 ----ISWLCVVSLSFLYNAWVIPLRASFPFQTKENTNIWLACDFCADIIYLLDVVFFKHRVMYLF 529
                .:|..::.:...|.|.::|...|  |:|::|...||..|...|:|:|:|:|...|......
  Rat   214 CVFKTTWDWIILILTFYTAILVPYNVS--FKTRQNNVAWLVVDSIVDVIFLVDIVLNFHTTFVGP 276

  Fly   530 EGFWVKNKNLTRKNYMRKLQFKLDLLALLPLELLYF---------------KLG----------- 568
            .|..:.:..|.|.||: |..|.:|||:.||.:::..               |:|           
  Rat   277 AGEVISDPKLIRMNYL-KTWFVIDLLSCLPYDVINAFENVDEVSAFMGDPGKIGFADQIPPPLEG 340

  Fly   569 --TQAVWLRFP--RFFKIQSFWEVFRLLDRVISSPHFVRVAKTLTYMLYMI-----HITAALYYA 624
              :|.:...|.  :..::.....|.|.||      |::.....:..:|..:     |..|.::|:
  Rat   341 RESQGISSLFSSLKVVRLLRLGRVARKLD------HYIEYGAAVLVLLVCVFGLAAHWMACIWYS 399

  Fly   625 YSDYQ-------GLGQNRWVF----------------SGK--GHP-----YVRCFAFATKTATSI 659
            ..||:       .:..|.|::                |||  |.|     |:....|...:.||:
  Rat   400 IGDYEIFDEDTKTIRNNSWLYQLALDIGTPYQFNGSGSGKWEGGPSKNSVYISSLYFTMTSLTSV 464

  Fly   660 G-KNPKPERQGEYVFMTVAWLMGVFVFALLIGQIRDIISTATRNKHEYRQLEDETLEYMRRLNLS 723
            | .|..|....|.:|.....::|..::|.:.|.:..|......|.:.|.::.:...::::...:.
  Rat   465 GFGNIAPSTDIEKIFAVAIMMIGSLLYATIFGNVTTIFQQMYANTNRYHEMLNSVRDFLKLYQVP 529

  Fly   724 QEVQSRVKMWFQFTWEQQRTLDESNILDALPINLKTDIAISVHIQTLSKVQLFADCEEALLRDLV 788
            :.:..||..:...||...|.:|...:|...|.:::.||.:.::.:...:...|....:..||.|.
  Rat   530 KGLSERVMDYIVSTWSMSRGIDTEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALA 594

  Fly   789 LKLRAVTFLPGDFVCRKGEVGREMYIVKLGQVQVMGGPSSDVVLATLTEGSVFGEISLLGINGAD 853
            ::.:.|...|||.:...||....:..|..|.::|:   ..|.|:|.|.:|.|||::.......| 
  Rat   595 MEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVI---QDDEVVAILGKGDVFGDVFWKEATLA- 655

  Fly   854 RRTADVRSKGYSNLFVLSKSDLNEVIAYYPTAQAILKK--------RARQLMRKNAAREREEERE 910
            :..|:||:..|.:|.|:.:..|.:|:.:|........:        |.|.:.||.:..:|||| |
  Rat   656 QSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNLILTYNLRKRIVFRKISDVKREEE-E 719

  Fly   911 RARSALQADVVIGNPKTPETAPKLLQTVIQALPFESPAVVLITRGSKRMRRKRQSVQMETIVEPK 975
            |.:...:|.::                    ||.:.|    :.|..:|.|:::            
  Rat   720 RMKRKNEAPLI--------------------LPPDHP----VRRLFQRFRQQK------------ 748

  Fly   976 MEVTGAAETQDQKGLKTGRCSPDLLSSIQQELKSKHKFINLTDSEK--ALISQ-SANNSLEDMKV 1037
             |...|||       :.||...||                  |.||  ||... |||:||....|
  Rat   749 -EARLAAE-------RGGRDLDDL------------------DVEKGNALTDHTSANHSLVKASV 787

  Fly  1038 V 1038
            |
  Rat   788 V 788

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CngBNP_611607.2 PLN03192 411..>891 CDD:215625 121/555 (22%)
CAP_ED 775..889 CDD:237999 31/113 (27%)
Kcnh1XP_017454422.1 PAS_9 41..135 CDD:463873
PLN03192 220..>647 CDD:215625 97/438 (22%)
PRK11753 608..>712 CDD:236969 27/107 (25%)
Blue background indicates that the domain is not in the aligned region.

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