DRSC/TRiP Functional Genomics Resources

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Protein Alignment CngB and Kcnh3

DIOPT Version :10

Sequence 1:NP_611607.2 Gene:CngB / 37479 FlyBaseID:FBgn0266346 Length:1040 Species:Drosophila melanogaster
Sequence 2:NP_058804.1 Gene:Kcnh3 / 27150 RGDID:71070 Length:1087 Species:Rattus norvegicus


Alignment Length:710 Identity:156/710 - (21%)
Similarity:268/710 - (37%) Gaps:163/710 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   415 PSPQHKVRLVPAGQSPHRGRLFEADTPRSNVWLCSSLCGANNDERTLDPQGKIYISWLCVVSLSF 479
            |..:||:.....|:.|:......|...:|...|..  |||            :..:|...:.|:.
  Rat   185 PKGKHKLNKGVFGEKPNLPEYKVAAIRKSPFILLH--CGA------------LRATWDGFILLAT 235

  Fly   480 LYNAWVIPL-----RASFPFQTKENTNIWLACDFCADIIYLLDVVFFKHRVMYLFEG----FWVK 535
            ||.|..:|.     .|..|...:...::   ||...:::::||:| ...|..::.:.    |..|
  Rat   236 LYVAVTVPYSVCVSTAREPSAARGPPSV---CDLAVEVLFILDIV-LNFRTTFVSKSGQVVFAPK 296

  Fly   536 NKNLTRKNYMRKLQFKLDLLALLPLELLY-FKLGTQ--AVWLRFPRFFKIQSFWEVFRLLDRVIS 597
            :..|   :|: ...|.||::|.||.:||: ||:...  |..|:..|..::      .|||.|:..
  Rat   297 SICL---HYV-TTWFLLDVIAALPFDLLHAFKVNVYVGAHLLKTVRLLRL------LRLLPRLDR 351

  Fly   598 SPHFVRVAKTLTYMLY--MIHITAALYY---------AYSDYQGLGQNRWV-------------- 637
            ...:..|..||...::  :.|..|.:::         :.|:...:|   |:              
  Rat   352 YSQYSAVVLTLLMAVFALLAHWVACVWFYIGQQEIENSESELPEIG---WLQELARRLETPYYLV 413

  Fly   638 --------FSGK---------------------GHP-----YVRCFAFATKTATSIG-KNPKPER 667
                    .||:                     |.|     |:....||..:.||:| .|.....
  Rat   414 SRSPDGGNSSGQSENCSSSGGGSEANGTGLELLGGPSLRSAYITSLYFALSSLTSVGFGNVSANT 478

  Fly   668 QGEYVFMTVAWLMGVFVFALLIGQIRDIISTATRNKHEYRQLEDETLEYMRRLNLSQEVQSRVKM 732
            ..|.:|.....|:|..:.|::.|.:..||......:..|.....:..:|:|...:.:.::.|:..
  Rat   479 DTEKIFSICTMLIGALMHAVVFGNVTAIIQRMYARRFLYHSRTRDLRDYIRIHRIPKPLKQRMLE 543

  Fly   733 WFQFTWEQQRTLDESNILDALPINLKTDIAISVHIQTLSKVQLFADCEEALLRDLVLKLRAVTFL 797
            :||.||.....:|.:.:|.:||..|:.|||:.:|.:.| ::.||.......||.|.|.||.....
  Rat   544 YFQATWAVNNGIDTTELLQSLPDELRADIAMHLHKEVL-QLPLFEAASRGCLRALSLALRPAFCT 607

  Fly   798 PGDFVCRKGEVGREMYIVKLGQVQVMGGPSSDVVLATLTEGSVFGEISLLGINGADRRTADVRSK 862
            ||:::..:|:..:.:|.|..|.::|:.|   ..|||.|.:|.:.| ..|.......:..|||:..
  Rat   608 PGEYLIHQGDALQALYFVCSGSMEVLKG---GTVLAILGKGDLIG-CELPQREQVVKANADVKGL 668

  Fly   863 GYSNLFVLSKSDLNEVIAYYPTAQAILKKRAR-------------------------QLMRKNAA 902
            .|..|..|..:.|:|.:|.||.......:..|                         .||.....
  Rat   669 TYCVLQCLQLAGLHESLALYPEFAPRFSRGLRGELSYNLGAGGVSAEVDTSSLSGDNTLMSTLEE 733

  Fly   903 REREEERERARSALQADVVIGNPKTPETAPKLLQTVIQALPFESPAVVLIT--RGSKRMR---RK 962
            :|.:.|:....|...||    .|.:|..:|....:        |.|..|::  |.:.|.|   |.
  Rat   734 KETDGEQGHTISPAPAD----EPSSPLLSPGCTSS--------SSAAKLLSPRRTAPRPRLGGRG 786

  Fly   963 RQSVQMETIVEPKMEVTGAAETQDQKGLK----TGRCSPDLLSSIQQELK-----SKHKF 1013
            |.|  ...:::|:...:....|.|  ||:    .....|||...:...::     .:|||
  Rat   787 RPS--RAGVLKPEAGPSAHPRTLD--GLQLPPMPWNVPPDLSPRVVDGIEDGCGSDQHKF 842

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CngBNP_611607.2 PLN03192 411..>891 CDD:215625 125/547 (23%)
CAP_ED 775..889 CDD:237999 34/113 (30%)
Kcnh3NP_058804.1 PAS_9 40..135 CDD:463873
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 137..161
PLN03192 227..>654 CDD:215625 103/448 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 416..436 2/19 (11%)
Selectivity filter. /evidence=ECO:0000250 468..473 2/4 (50%)
cyc_nuc_ocin <609..704 CDD:274839 26/98 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 733..813 22/95 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 975..1061
Blue background indicates that the domain is not in the aligned region.

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